- #Quantitative data analysis programs software
- #Quantitative data analysis programs code
- #Quantitative data analysis programs series
- #Quantitative data analysis programs download
Learning to use this tool can be beneficial for anyone who needs to organize code. It creates isolation for individuals to work on new features and allows them to easily merge those changes together.
#Quantitative data analysis programs code
This tool can be used for managing a code base and can be extremely helpful when multiple people are working on the same project.
#Quantitative data analysis programs download
Git is a free, open-source version control system available for download online.
#Quantitative data analysis programs software
The Metabolomics Association of North America Software and Data Exchange (MaNaSoDa)Īssembles and promotes sharing of informatics resources among a broader metabolomics community. SIRIUS uses isotope pattern analysis for detecting the molecular formula and further analyses the fragmentation pattern of a compound using fragmentation trees. Open-source, java-based (GUI and CLI or Command Line version)Ī software framework for discovering a landscape of de-novo identification of metabolites using single and tandem mass spectrometry. non-components."Ī number of applications for reading and converting vendor formats, viewing and analyzing data. Also allows plotting and filtering HRMS data for mass defects, frequent m/z distances and components vs.
#Quantitative data analysis programs series
The resulting isotopic pattern and adduct groups can then be combined to so-called components, with homologue series information attached. R package for "screening a HRMS data set for peaks related by (1) isotope patterns, (2) different adducts of the same molecule and/or (3) homologue series. MS-DIAL has a version of Fiehn lab’s GC/MS database and in silico retention time- and MS/MS database for LC/MS/MS based lipidomics.Īn open-source software for mass-spectrometry data processing, with the main focus on LC-MS data with the goal of providing a user-friendly, flexible and easily extendable software with a complete set of modules covering the entire LC-MS data analysis workflow. A score calculated using the fragment peak matches gives hints to the quality of the candidate spectrum assignment.Ī program for untargeted metabolomics that supports multiple instruments (GC/MS, GC/MS/MS, LC/MS, and LC/MS/MS) and vendors. Candidate molecules of different databases are fragmented in silico and matched against mass to charge values. GNPS aids in identification and discovery throughout the entire life cycle of data from initial data acquisition/analysis to post publication.Ī freely available software for the annotation of high precision tandem mass spectra of metabolites. Tools that the researchers at Pacific Northwest National Laboratory are developing to advance standards-free metabolomics-the identification of small molecules without reliance on standards-using calculated chemical properties and associated matching with multiple experimental attributes.Ī web-based mass spectrometry ecosystem that aims to be an open-access knowledge base for community-wide organization and sharing of raw, processed, or annotated fragmentation mass spectrometry data (MS/MS).
Interactive result and raw data plot."Ĭompetitive Fragmentation Modeling (CFM-ID)Ĭreated by the Wishart lab at the University of Alberta and provides a platform for MS-spectra prediction, MS-spectra annotation, and MS-based compound identification.
R package for "sequential partitioning, clustering and peak detection of centroided LC-MS mass spectrometry data (.mzXML). The workflow includes a growing bundle of data mining functionalities such as targeted screening, non-targeted peak grouping, homologue series detection, quantification and statistical analysis. Nameįreely available for contributors purchased through enviBeeĪ versatile data-mining workflow for the automatized detection of patterns and compounds in hyphenated (LC or GC) or direct-injection mass spectrometry. Note: these tools are not exhaustive, but are meant to be representative of software that is available to NTA researchers.